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1

Critical Size for Intracluster Proton Transfer from Water to an Anion

Israel Wolf, Avraham Shapira, Rina Giniger, Yifat Miller, R. Benny Gerber, Ori Cheshnovsky

Journal:

Angewandte Chemie

Year:

2008

Language:

english

File:

PDF, 329 KB

english, 2008

2

Critical Size for Intracluster Proton Transfer from Water to an Anion

Israel Wolf, Avraham Shapira, Rina Giniger, Yifat Miller, R. Benny Gerber, Ori Cheshnovsky

Journal:

Angewandte Chemie International Edition

Year:

2008

Language:

english

File:

PDF, 329 KB

english, 2008

3

Molecular-Level Examination of Cu2+ Binding Structure for Amyloid Fibrils of 40-Residue Alzheimer’s β by Solid-State NMR Spectroscopy

Parthasarathy, Sudhakar, Long, Fei, Miller, Yifat, Xiao, Yiling, McElheny, Dan, Thurber, Kent, Ma, Buyong, Nussinov, Ruth, Ishii, Yoshitaka

Journal:

Journal of the American Chemical Society

Year:

2011

Language:

english

File:

PDF, 1.19 MB

english, 2011

4

Metal binding sites in amyloid oligomers: Complexes and mechanisms

Yifat Miller, Buyong Ma, Ruth Nussinov

Journal:

Coordination Chemistry Reviews

Year:

2012

Language:

english

File:

PDF, 1.03 MB

english, 2012

5

Maternal hypothyroidism may affect fetal growth and neonatal thyroid function

Shraga Blazer, Yifat Moreh-Waterman, Rachel Miller-Lotan, Ada Tamir, Ze’ev Hochberg

Journal:

Obstetrics & Gynecology

Year:

2003

Language:

english

File:

PDF, 331 KB

english, 2003

6

Polymorphism of Alzheimer's Aβ17-42 (p3) Oligomers: The Importance of the Turn Location and Its Conformation

Miller, Yifat, Ma, Buyong, Nussinov, Ruth

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 906 KB

english, 2009

7

Photodissociation yields for vibrationally excited states of sulfuric acid under atmospheric conditions

Miller, Yifat, Gerber, R. B., Vaida, Veronica

Journal:

Geophysical Research Letters

Year:

2007

Language:

english

File:

PDF, 255 KB

english, 2007

8

Polymorphism in Alzheimer Aβ Amyloid Organization Reflects Conformational Selection in a Rugged Energy Landscape

Miller, Yifat, Ma, Buyong, Nussinov, Ruth

Journal:

Chemical Reviews

Year:

2010

Language:

english

File:

PDF, 3.54 MB

english, 2010

9

Complexes of HNO3 and NO3− with NO2 and N2O4, and their potential role in atmospheric HONO formation

Kamboures, Michael A., Raff, Jonathan D., Miller, Yifat, Phillips, Leon F., Finlayson-Pitts, Barbara J., Gerber, R. Benny

Journal:

Physical Chemistry Chemical Physics

Year:

2008

Language:

english

File:

PDF, 432 KB

english, 2008

10

Proton Transfer in Wild-Type GFP and S205V Mutant Is Reduced by Conformational Changes of Residues in the Proton Wire

Simkovitch, Ron, Huppert, Amit, Huppert, Dan, Remington, S. James, Miller, Yifat

Journal:

Journal of Physical Chemistry B

Year:

2013

Language:

english

File:

PDF, 507 KB

english, 2013

11

Vibrational spectroscopy of (SO[sub 4][sup 2−])⋅(H[sub 2]O)[sub n] clusters, n=1–5: Harmonic and anharmonic calculations and experiment

Miller, Yifat, Chaban, Galina M., Zhou, Jia, Asmis, Knut R., Neumark, Daniel M., Benny Gerber, R.

Journal:

The Journal of Chemical Physics

Year:

2007

Language:

english

File:

PDF, 728 KB

english, 2007

12

Polymorphism in Alzheimer Aβ Amyloid Organization: Insight into Aβ Aggregation

Miller, Yifat, Ma, Buyong, Nussinov, Ruth

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 40 KB

english, 2010

13

Investigating the Interactions between Aβ and Amylin: Insight into the Link between Alzheimer's and Type II Diabetes

Miller, Yifat, Baram, Michal

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 38 KB

english, 2013

14

The Deltak280 Mutation in the Tau Protein may Induce the Formation of Stable Abeta-Tau Aggregates in FTDP-17

Raz, Yoav, Adler, Juliane, Huster, Daniel, Haupl, Tilmann, Abel, Bernd, Miller, Yifat

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 38 KB

english, 2013

15

Alzheimer Aβ Amyloid Annular Fibrils: Insight Into Polymorphism

Miller, Yifat, Ma, Buyong, Nussinov, Ruth

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 39 KB

english, 2011

16

Insight into the Coordination and the Binding Sites of Cu 2+ by the Histidyl-6-Tag using Experimental and Computational Tools

Watly, Joanna, Simonovsky, Eyal, Wieczorek, Robert, Barbosa, Nuno, Miller, Yifat, Kozlowski, Henryk

Journal:

Inorganic Chemistry

Year:

2014

Language:

english

File:

PDF, 2.29 MB

english, 2014

17

The Unique Alzheimer’s β-Amyloid Triangular Fibril Has a Cavity along the Fibril Axis under Physiological Conditions

Miller, Yifat, Ma, Buyong, Nussinov, Ruth

Journal:

Journal of the American Chemical Society

Year:

2011

Language:

english

File:

PDF, 5.19 MB

english, 2011

18

Structure of Large Nitrate−Water Clusters at Ambient Temperatures: Simulations with Effective Fragment Potentials and Force Fields with Implications for Atmospheric Chemistry

Miller, Yifat, Thomas, Jennie L., Kemp, Daniel D., Finlayson-Pitts, Barbara J., Gordon, Mark S., Tobias, Douglas J., Gerber, R. Benny

Journal:

Journal of Physical Chemistry A

Year:

2009

Language:

english

File:

PDF, 2.49 MB

english, 2009

19

Dynamics of Vibrational Overtone Excitations of H 2 SO 4 , H 2 SO 4 −H 2 O: Hydrogen−Hopping and Photodissociation Processes

Miller, Yifat, Gerber, R. Benny

Journal:

Journal of the American Chemical Society

Year:

2006

Language:

english

File:

PDF, 57 KB

english, 2006

20

Ionization of N 2 O 4 in Contact with Water: Mechanism, Time Scales and Atmospheric Implications

Miller, Yifat, Finlayson-Pitts, Barbara J., Gerber, R. Benny

Journal:

Journal of the American Chemical Society

Year:

2009

Language:

english

File:

PDF, 4.25 MB

english, 2009

21

Synergistic Interactions between Repeats in Tau Protein and Aβ Amyloids May Be Responsible for Accelerated Aggregation via Polymorphic States

Miller, Yifat, Ma, Buyong, Nussinov, Ruth

Journal:

Year:

2011

Language:

english

File:

PDF, 4.66 MB

english, 2011

22

The influence of the ΔK280 mutation and N- or C-terminal extensions on the structure, dynamics, and fibril morphology of the tau R2 repeat

Raz, Yoav, Adler, Juliane, Vogel, Alexander, Scheidt, Holger A., Häupl, Tilmann, Abel, Bernd, Huster, Daniel, Miller, Yifat

Journal:

Physical Chemistry Chemical Physics

Year:

2014

Language:

english

File:

PDF, 3.17 MB

english, 2014

23

Dynamics of proton recombination with NO3− anion in water clusters

Miller, Yifat, Gerber, R. Benny

Journal:

Physical Chemistry Chemical Physics

Year:

2008

Language:

english

File:

PDF, 886 KB

english, 2008

24

Effects of mutations in de novo designed synthetic amphiphilic β-sheet peptides on self-assembly of fibrils

Raz, Yoav, Rubinov, Boris, Matmor, Maayan, Rapaport, Hanna, Ashkenasy, Gonen, Miller, Yifat

Journal:

Chemical Communications

Year:

2013

Language:

english

File:

PDF, 1.40 MB

english, 2013

25

Insight into the structure and the mechanism of the slow proton transfer in the GFP double mutant T203V/S205A

Wineman-Fisher, Vered, Simkovitch, Ron, Shomer, Shay, Gepshtein, Rinat, Huppert, Dan, Saif, Mari, Kallio, Karen, Remington, S. James, Miller, Yifat

Journal:

Physical Chemistry Chemical Physics

Year:

2014

Language:

english

File:

PDF, 2.57 MB

english, 2014

26

The unusual binding mechanism of Cu( ii ) ions to the poly-histidyl domain of a peptide found in the venom of an African viper

Pontecchiani, Fabio, Simonovsky, Eyal, Wieczorek, Robert, Barbosa, Nuno, Rowinska-Zyrek, Magdalena, Potocki, Slawomir, Remelli, Maurizio, Miller, Yifat, Kozlowski, Henryk

Journal:

Dalton Transactions

Year:

2014

Language:

english

File:

PDF, 2.50 MB

english, 2014

27

Carotenoid derivatives inhibit nuclear factor kappa B activity in bone and cancer cells by targeting key thiol groups

Linnewiel-Hermoni, Karin, Motro, Yair, Miller, Yifat, Levy, Joseph, Sharoni, Yoav

Journal:

Free Radical Biology and Medicine

Year:

2014

Language:

english

File:

PDF, 2.47 MB

english, 2014

28

Orientations of Residues along the β-Arch of Self-Assembled Amylin Fibril-Like Structures Lead to Polymorphism

Wineman-Fisher, Vered, Atsmon-Raz, Yoav, Miller, Yifat

Journal:

Biomacromolecules

Year:

2015

Language:

english

File:

PDF, 5.34 MB

english, 2015

29

Polymorphism in Self-Assembly of Peptide-Based β-Hairpin Contributes to Network Morphology and Hydrogel Mechanical Rigidity

Miller, Yifat, Ma, Buyong, Nussinov, Ruth

Journal:

Journal of Physical Chemistry B

Year:

2015

Language:

english

File:

PDF, 6.64 MB

english, 2015

30

Configuration change from cis to trans of isothiocyanato groups in nickel(II) species: Experimental verification and theoretical interpretation of reaction consequence and study on their bio-activity

Adhikary, Jaydeep, Chakraborty, Prateeti, Chattopadhyay, Tanmay, Prasad, Ritika, Motro, Yair, Koch, Biplob, Mautner, Franz A., Miller, Yifat, Das, Debasis

Journal:

Year:

2015

Language:

english

File:

PDF, 2.56 MB

english, 2015

31

Spontaneous Structural Transition in Phospholipid-Inspired Aromatic Phosphopeptide Nanostructures

Pellach, Michal, Atsmon-Raz, Yoav, Simonovsky, Eyal, Gottlieb, Hugo, Jacoby, Guy, Beck, Roy, Adler-Abramovich, Lihi, Miller, Yifat, Gazit, Ehud

Journal:

Year:

2015

Language:

english

File:

PDF, 9.01 MB

english, 2015

32

Reaction of OH and NO at Low Temperatures in the Presence of Water: the Role of Clusters

Liessmann, Matthias, Miller, Yifat, Gerber, Benny, Abel, Bernd

Journal:

Zeitschrift für Physikalische Chemie

Year:

2011

Language:

english

File:

PDF, 553 KB

english, 2011

33

Molecular Modeling: Advancements and Applications

Pimentel, André Silva, Guimarães, Cristiano R. W., Miller, Yifat

Journal:

Journal of Chemistry

Year:

2013

Language:

english

File:

PDF, 48 KB

english, 2013

34

A Proposed Atomic Structure of the Self-Assembly of the Non-Amyloid-β Component of Human α-Synuclein As Derived by Computational Tools

Atsmon-Raz, Yoav, Miller, Yifat

Journal:

Journal of Physical Chemistry B

Year:

2015

Language:

english

File:

PDF, 1.86 MB

english, 2015

35

AIP Conference Proceedings [AIP Publishing LLC INTERNATIONAL CONFERENCE OF COMPUTATIONAL METHODS IN SCIENCES AND ENGINEERING 2014 (ICCMSE 2014) - Athens, Greece (4–7 April 2014)] - Preface of the "Symposium on metal binding sites in amyloids"

Year:

2014

Language:

english

File:

PDF, 176 KB

english, 2014

36

African Viper Poly-His Tag Peptide Fragment Efficiently Binds Metal Ions and Is Folded into an α-Helical Structure

Watly, Joanna, Simonovsky, Eyal, Barbosa, Nuno, Spodzieja, Marta, Wieczorek, Robert, Rodziewicz-Motowidlo, Sylwia, Miller, Yifat, Kozlowski, Henryk

Journal:

Inorganic Chemistry

Year:

2015

Language:

english

File:

PDF, 3.46 MB

english, 2015

37

Co-Aggregation of Alpha-Synuclein with Amylin(HIAPP) Leads to an Increased Risk in Type ii Diabetes Patients for Developing Parkinson's Disease

Atsmon-Raz, Yoav, Miller, Yifat

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 39 KB

english, 2015

38

Non-Amyloid-β Component of Human α-Synuclein Oligomers Induces Formation of New Aβ Oligomers: Insight into the Mechanisms That Link Parkinson’s and Alzheimer’s Diseases

Atsmon-Raz, Yoav, Miller, Yifat

Journal:

ACS Chemical Neuroscience

Year:

2015

Language:

english

File:

PDF, 3.22 MB

english, 2015

39

Termini capping of metal-poly-His peptide complexes induces the formation of α-helix

Simonovsky, Eyal, Kozlowski, Henryk, Miller, Yifat

Journal:

Year:

2015

Language:

english

File:

PDF, 613 KB

english, 2015

40

Reaction Mechanism for Direct Proton Transfer from Carbonic Acid to a Strong Base in Aqueous Solution II: Solvent Coordinate-Dependent Reaction Path

Daschakraborty, Snehasis, Kiefer, Philip M., Miller, Yifat, Motro, Yair, Pines, Dina, Pines, Ehud, Hynes, James T.

Journal:

Journal of Physical Chemistry B

Year:

2016

Language:

english

File:

PDF, 876 KB

english, 2016

41

Reaction Mechanism for Direct Proton Transfer from Carbonic Acid to a Strong Base in Aqueous Solution I: Acid and Base Coordinate and Charge Dynamics

Daschakraborty, Snehasis, Kiefer, Philip M., Miller, Yifat, Motro, Yair, Pines, Dina, Pines, Ehud, Hynes, James T.

Journal:

Journal of Physical Chemistry B

Year:

2016

Language:

english

File:

PDF, 600 KB

english, 2016

42

The unusual metal ion binding ability of histidyl tags and their mutated derivatives

Brasili, Davide, Watly, Joanna, Simonovsky, Eyal, Guerrini, Remo, Barbosa, Nuno A., Wieczorek, Robert, Remelli, Maurizio, Kozlowski, Henryk, Miller, Yifat

Journal:

Dalton Transactions

Year:

2016

Language:

english

File:

PDF, 2.84 MB

english, 2016

43

Zinc ions promote Alzheimer Aβ aggregation via population shift of polymorphic states

Yifat Miller, Buyong Ma, Ruth Nussinov and H. Eugene Stanley

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 1.50 MB

english, 2010

44

How Acidic Is Carbonic Acid?

Pines, Dina, Ditkovich, Julia, Mukra, Tzach, Miller, Yifat, Kiefer, Philip M., Daschakraborty, Snehasis, Hynes, James T., Pines, Ehud

Journal:

Journal of Physical Chemistry B

Year:

2016

Language:

english

File:

PDF, 1.18 MB

english, 2016

45

The removal of disulfide bonds in amylin oligomers leads to the conformational change of the ‘native’ amylin oligomers

Wineman-Fisher, Vered, Tudorachi, Lucia, Nissim, Einav, Miller, Yifat

Journal:

Physical Chemistry Chemical Physics

Year:

2016

Language:

english

File:

PDF, 2.06 MB

english, 2016

46

Insight into the Metal Binding Sites in Amylin Aggregates

Wineman-Fisher, Vered, Miller, Yifat

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 39 KB

english, 2015

47

The non Amyloid-β Component (NAC) of Human α-Synuclein Oligomers Induces the Formation of New Aβ Oligomers: Insight into the Molecular Interactions that Link Parkinson's Disease and Alzheimer's Disease

Atsmon-Raz, Yoav, Miller, Yifat

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 39 KB

english, 2016

48

Challenges in studying the structures of metal-amyloid oligomers related to type 2 diabetes, Parkinson's disease, and Alzheimer's disease

Wineman-Fisher, Vered, Bloch, Daniel Nir, Miller, Yifat

Journal:

Coordination Chemistry Reviews

Year:

2016

Language:

english

File:

PDF, 1.44 MB

english, 2016

49

Insight into Atomic Resolution of the Cross-Seeding between Tau/Mutated Tau and Amyloid-β in Neurodegenerative Diseases

Atsmon-Raz, Yoav, Miller, Yifat

Journal:

Israel Journal of Chemistry

Year:

2015

Language:

english

File:

PDF, 5.41 MB

english, 2015

50

Structural Insights into the Polymorphism of Self-Assembled Amylin Oligomers

Wineman-Fisher, Vered, Miller, Yifat

Journal:

Israel Journal of Chemistry

Year:

2016

Language:

english

File:

PDF, 2.01 MB

english, 2016